I can\'t speak for what is considered "in rotation" versus "on hiatus" versus "retired permanently", but here is a complete list of songs that current incarnation of the Breakfast has played. Keep in mind that this list includes songs only played once as well as songs that have only been played at acoustic shows.
Originals
Beef Barley
Buquebus
Cut Me Some Slack
Dig
Doughboy
Episode 1 (Happy)
Escher\'s Etchings (Parts 1 & 2)
Fairy
Gladys Pimp and Kangaroos With Me
Good Things
The Grand Scheme of Things
Gravity
Hard Luck Harry
Honey Butter
Inner Glimpse
The Late and the Great
Living Daylights
May Fly Disarray
The Message
Mooboo\'s Voodoo (Episode 2)
Over Exposure
Psygn
Puppetry
Question Mark and the Mind
Reel Time
Rufus
Rush
Rust
See the Light
Slow Merge
Son of Simpleton
The Sound
Space City Affair
Spunk
Synergy
Taboo or Not Taboot
Tribal Funk Affliction
Tricky Ways
Tunage
Vera Street
The Vermont Song
What the Funk
World Needs Us
Covers
Ain\'t Wastin\' Time No More
And She Was
Cantaloupe Island
The Chicken
Cult of Personality
Cut My Hair
Freedom Jazz Dance
Get Up (I Feel Like a) Sex Machine
Impressions
One More Saturday Night
Reba
Spain
Straight, No Chaser
Sweet Georgia Brown
Sylvia
Ten Years Gone
"The Price is Right" Theme
Time of the Season
Well You Needn\'t
What So Never the Dance
Where\'s Sly
Willie the Pimp